Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
AI Summary:
The article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms from chicken caeca. The samples were collected from broiler chickens, with one group infected with Newcastle Disease Virus and one uninfected control group.AI Topics:
This article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms originating from chicken caeca. The samples originate from broiler chickens, one group was infected with Newcastle Disease Virus (NDV) and one uninfected control group. There were four birds per group. Both groups were raised on commercially available antibiotic free feed under a semi-controlled setup. The binning step of the samples identified 130 MAGs with ≥50% completion, and ≤10% contamination. The data presented includes sequences in FASTA format, tables of functional annotation of genes, and data from two different approaches for phylogenetic tree construction using these MAGs. Major geochemical cycles at community level including carbon, sulfur, and nitrogen cycles are also presented.
Ameer, Aqsa
Author
Saleem, Farrukh and Ameer, Aqsa and Afzal, Farhan and Usman, Muhammad and Irshad, Hamid and Sattar, Sadia and Ijaz, Umer Zeeshan and Javed, Sundus (2025) A cross-sectional survey of poultry management systems, practices and antimicrobial use in relation to disease outbreak in Pakistan. BMC Research Notes, 18: 144. ISSN 1756-0500
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer and Javed, Sundus (2024) Dataset of 16S rRNA gene sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. Data In Brief, 57: 110957. ISSN 2352-3409
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
See full publications listSaleem, Farrukh
Author
Saleem, Farrukh and Ameer, Aqsa and Afzal, Farhan and Usman, Muhammad and Irshad, Hamid and Sattar, Sadia and Ijaz, Umer Zeeshan and Javed, Sundus (2025) A cross-sectional survey of poultry management systems, practices and antimicrobial use in relation to disease outbreak in Pakistan. BMC Research Notes, 18: 144. ISSN 1756-0500
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer and Javed, Sundus (2024) Dataset of 16S rRNA gene sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. Data In Brief, 57: 110957. ISSN 2352-3409
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
See full publications listKeating, Ciara
Author
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer and Javed, Sundus (2024) Dataset of 16S rRNA gene sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. Data In Brief, 57: 110957. ISSN 2352-3409
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
Saleem, Farrukh and Ameer, Aqsa and Star-Shirko, Banaz and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. Data In Brief, 54: 110552. ISSN 2352-3409
See full publications listGundogdu, Ozan
Author
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
See full publications listIjaz, Umer
Author
Cholet, Fabien and Vignola, Marta and Quinn, Dominic and Ijaz, Umer Z. and Sloan, William T. and Smith, Cindy J. (2025) Microbial ecology of drinking water biofiltration based on 16S rRNA sequencing: a meta-analysis. Water Research, 281: 123684. ISSN 0043-1354
Saleem, Farrukh and Ameer, Aqsa and Afzal, Farhan and Usman, Muhammad and Irshad, Hamid and Sattar, Sadia and Ijaz, Umer Zeeshan and Javed, Sundus (2025) A cross-sectional survey of poultry management systems, practices and antimicrobial use in relation to disease outbreak in Pakistan. BMC Research Notes, 18: 144. ISSN 1756-0500
Badar, Ayesha and Aqueel, Rhea and Nawaz, Ali and Ijaz, Umer Zeeshan and Malik, Kauser Abdulla (2025) Microbiota transplantation for Cotton Leaf Curl Disease suppression - core microbiome and transcriptome dynamics. Communications Biology, 8 (1): 380. ISSN 2399-3642
See full publications listJaved, Sundus
Author
Ameer, Aqsa and Saleem, Farrukh and Keating, Ciara and Gundogdu, Ozan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54: 110487. ISSN 2352-3409
Gul, Farzana and Herrema, Hilde and Davids, Mark and Keating, Ciara and Nasir, Arshan and Ijaz, Umer Zeeshan and Javed, Sundus (2024) Gut microbial ecology and exposome of a healthy Pakistani cohort. Gut Pathogens, 16: 5. ISSN 1757-4749
See full publications listAvailable under License Creative Commons Attribution.
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